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| import argparse | |
| import json | |
| import os | |
| import faiss | |
| import torch | |
| from datasets import load_dataset, Dataset | |
| from tqdm.auto import tqdm | |
| from transformers import AutoTokenizer, DPRQuestionEncoder, DPRContextEncoder | |
| from common import articles_to_paragraphs, embed_questions, embed_passages, create_kilt_datapoint, \ | |
| kilt_wikipedia_columns | |
| from common import kilt_wikipedia_paragraph_columns as columns | |
| def generate_support_docs(args): | |
| dims = 128 | |
| min_chars_per_passage = 200 | |
| device = ("cuda" if torch.cuda.is_available() else "cpu") | |
| lfqa = load_dataset("vblagoje/lfqa") | |
| ctx_tokenizer = AutoTokenizer.from_pretrained(args.ctx_encoder_name) | |
| ctx_model = DPRContextEncoder.from_pretrained(args.ctx_encoder_name).to(device) | |
| _ = ctx_model.eval() | |
| question_tokenizer = AutoTokenizer.from_pretrained(args.question_encoder_name) | |
| question_model = DPRQuestionEncoder.from_pretrained(args.question_encoder_name).to(device) | |
| _ = question_model.eval() | |
| kilt_wikipedia = load_dataset("kilt_wikipedia", split="full") | |
| kilt_wikipedia_paragraphs = kilt_wikipedia.map(articles_to_paragraphs, batched=True, | |
| remove_columns=kilt_wikipedia_columns, | |
| batch_size=512, | |
| cache_file_name=f"../data/wiki_kilt_paragraphs_full.arrow", | |
| desc="Expanding wiki articles into paragraphs") | |
| # use paragraphs that are not simple fragments or very short sentences | |
| # Wikipedia Faiss index needs to fit into a 16 Gb GPU | |
| kilt_wikipedia_paragraphs = kilt_wikipedia_paragraphs.filter( | |
| lambda x: (x["end_character"] - x["start_character"]) > min_chars_per_passage) | |
| def query_index(question, topk=7): | |
| topk = topk * 3 # grab 3x results and filter for word count | |
| question_embedding = embed_questions(question_model, question_tokenizer, [question]) | |
| scores, wiki_passages = kilt_wikipedia_paragraphs.get_nearest_examples("embeddings", question_embedding, k=topk) | |
| retrieved_examples = [] | |
| r = list(zip(wiki_passages[k] for k in columns)) | |
| for i in range(topk): | |
| retrieved_examples.append({k: v for k, v in zip(columns, [r[j][0][i] for j in range(len(columns))])}) | |
| return retrieved_examples | |
| def create_support_doc(dataset: Dataset, output_filename: str): | |
| progress_bar = tqdm(range(len(dataset)), desc="Creating supporting docs") | |
| with open(output_filename, "w") as fp: | |
| for example in dataset: | |
| wiki_passages = query_index(example["title"]) | |
| kilt_dp = create_kilt_datapoint(example, columns, wiki_passages) | |
| json.dump(kilt_dp, fp) | |
| fp.write("\n") | |
| progress_bar.update(1) | |
| if not os.path.isfile(args.index_file_name): | |
| def embed_passages_for_retrieval(examples): | |
| return embed_passages(ctx_model, ctx_tokenizer, examples, max_length=128) | |
| paragraphs_embeddings = kilt_wikipedia_paragraphs.map(embed_passages_for_retrieval, | |
| batched=True, batch_size=512, | |
| cache_file_name=args.encoded_kilt_file_name, | |
| desc="Creating faiss index") | |
| paragraphs_embeddings.add_faiss_index(column="embeddings", custom_index=faiss.IndexFlatIP(dims)) | |
| paragraphs_embeddings.save_faiss_index("embeddings", args.index_file_name) | |
| kilt_wikipedia_paragraphs.load_faiss_index("embeddings", args.index_file_name, device=0) | |
| create_support_doc(lfqa["train"], "lfqa_dpr_train_precomputed_dense_docs.json") | |
| create_support_doc(lfqa["validation"], "lfqa_dpr_validation_precomputed_dense_docs.json") | |
| if __name__ == "__main__": | |
| parser = argparse.ArgumentParser(description="Creates support docs for seq2seq model training") | |
| parser.add_argument( | |
| "--ctx_encoder_name", | |
| default="vblagoje/dpr-ctx_encoder-single-lfqa-base", | |
| help="Question encoder to use", | |
| ) | |
| parser.add_argument( | |
| "--question_encoder_name", | |
| default="vblagoje/dpr-question_encoder-single-lfqa-base", | |
| help="Question encoder to use", | |
| ) | |
| parser.add_argument( | |
| "--index_file_name", | |
| default="../data/kilt_dpr_wikipedia_first.faiss", | |
| help="Faiss index with passage embeddings", | |
| ) | |
| parser.add_argument( | |
| "--encoded_kilt_file_name", | |
| default="../data/kilt_embedded.arrow", | |
| help="Encoded KILT file name", | |
| ) | |
| main_args, _ = parser.parse_known_args() | |
| generate_support_docs(main_args) | |