Noelia Ferruz
nferruz
AI & ML interests
artificial intelligence, protein design, structural biology.
Organizations
nferruz's activity
Finetuned model generates sequences far different from sequences in the finetune training set
1
#11 opened about 1 month ago
by
atqamar
Resources required for fine tuning Protgpt2
8
#36 opened 11 months ago
by
ChetnaA
Error during Finetuning
12
#48 opened 5 months ago
by
pawanpc
OOM During Finetuning on A100 GPU
2
#47 opened 5 months ago
by
jashton1315
How to finetune models on GPU?
1
#46 opened 5 months ago
by
Jonathanlin
Introducing protgpt2-distilled-tiny: A Leaner, Faster Approach to Protein Sequence Generation
1
#45 opened 5 months ago
by
littleworth
Guidance Needed for Training with nferruz/UR50_2021_04
1
#4 opened 6 months ago
by
littleworth
how can i fine tune the model on the colab?
1
#43 opened 7 months ago
by
TomLong
How can I generate a new sequence by fixing some of the residues ?
1
#42 opened 8 months ago
by
polytide
Problems encountered when fine-tuning model validation
1
#41 opened 9 months ago
by
ysy2002
Inquiry on ProtGPT2 Model Performance and Fine-Tuning Evaluation
1
#38 opened 10 months ago
by
littleworth
How to change the first generate amino acid?
1
#40 opened 9 months ago
by
Jonathanlin
How to create embeddings using ProtGPT2
1
#39 opened 9 months ago
by
PurvaTijare
how to define the compute_metrics function in fine-tuning
1
#37 opened 11 months ago
by
Biohebb
Many generated sequences are highly similar to WT sequences
1
#10 opened 11 months ago
by
ShanGao
Questions regarding fine tuning protgpt2
2
#35 opened 11 months ago
by
xenidisv
How to provide the prompt
1
#1 opened 11 months ago
by
ShanGao
Example of `training.txt` and `validation.txt` for fine tuning ProtGPT2
4
#24 opened over 1 year ago
by
littleworth
pre-training code sharing
2
#32 opened about 1 year ago
by
Eric2333
Predicting end of sequence
1
#31 opened about 1 year ago
by
pipparichter
Generate mutation by define specific stations
3
#15 opened over 1 year ago
by
Aviv
How to work training and generating on GPU environment
2
#29 opened over 1 year ago
by
Jonathanlin
fine-tuning the model with orphan sequences
1
#6 opened over 1 year ago
by
rqh
Model fine-tuning does not work well
1
#28 opened over 1 year ago
by
rqh
Discrepancy between num_samples when fine tuning and the number of samples in my training file
2
#27 opened over 1 year ago
by
codev
Example 2: Fine-tuning on a set of user-defined sequences
2
#5 opened over 1 year ago
by
ipark
Can we do the inferences on ZymCTRL with multi GPUs?
2
#4 opened over 1 year ago
by
guruace
Inquiry Regarding ProtGPT2 Prompt and Output Length
2
#26 opened over 1 year ago
by
littleworth
Making ProtGPT2-medium and ProtGPT2-small available?
3
#25 opened over 1 year ago
by
littleworth
🚩 Report
1
#3 opened over 1 year ago
by
shellx
There is an 'X' in generated sequences.
1
#23 opened over 1 year ago
by
SweetGAN
Conserving the end of a protein sequence
2
#21 opened over 1 year ago
by
codev
New line characters in generated sequences
1
#20 opened over 1 year ago
by
emrecicekyurt
Recommended GPU architecture for fine tuning
7
#19 opened over 1 year ago
by
codev
Fine-tuning memory and custom tokenizer
2
#2 opened over 1 year ago
by
ipark
Finetune without using run_clm.py
1
#16 opened over 1 year ago
by
TianlaiChen
nferruz/UR50_2021_04_Text
3
#2 opened over 1 year ago
by
alex6095
Basic sequence generation usage
1
#13 opened over 1 year ago
by
kevinky
clarification question- sequence with invalid proteins
2
#14 opened over 1 year ago
by
skr3178
Embedding sequences
4
#12 opened over 1 year ago
by
flpgrz
Unable to finetune ProtGPT2 model
3
#11 opened almost 2 years ago
by
Sirisha
Finetuning ProtGPT2 on a set of user-defined sequences
4
#9 opened almost 2 years ago
by
SweetGAN
can protgpt2 be used in "Fill-Mask" tasks?
2
#10 opened almost 2 years ago
by
likun
Output of ZymCTRL
3
#1 opened almost 2 years ago
by
0jj0
Generation of sequences based on one input sequence
3
#8 opened almost 2 years ago
by
0jj0
Different values observed wrt HF PPL documentation
2
#3 opened about 2 years ago
by
nferruz
Lengths of designed proteins
1
#6 opened about 2 years ago
by
SenyorDrew
Minimal number of sequences for fine tuning
3
#2 opened about 2 years ago
by
ShanGao
Generating Sequences Pre-conditioned on Embeddings from MSA Transformer
6
#5 opened about 2 years ago
by
hunarbatra
Use model for calculating sequence perplexity
3
#4 opened about 2 years ago
by
avuhong
ProtGPT2 QA Task for Mutation Generation
3
#3 opened about 2 years ago
by
hunarbatra
Fix `license` metadata
1
#1 opened over 2 years ago
by
julien-c
End-to-end example for AA sequence vectorization
1
#1 opened over 2 years ago
by
ptynecki
Update app.py
#2 opened over 2 years ago
by
nferruz