==Data that needs to be submitted (March 2020)== We need to explicitly submit annotations to all entities—meaning the directly annotated entity and the inferred entities. Otherwise they will not show on the relevant page/table in the Alliance. Strains, Alleles, Transgenes and Genes associated with disease need to be included. ====Disease data submission for Alliance JSON==== {|Class="wikitable" |+Mapping of acedb tags to objects in JSON |- ! !!Acedb Tags in Annotation <br/> (From ?Disease_model_annotation class)!!Primary Object!!Number of Objects<br/>with annotations!!JSON Objects |- |1||Modeled_by Disease_relevant_gene||Gene||1||objectID: GeneID |- |2||Modeled_by Variation<br/>Modeled_by Disease_relevant_gene||Variation||2||objectID: GeneID <br/> primaryGeneticEntityIDs: AlleleID |- |3||Modeled_by Strain||Strain||1||objectID: strainID |- |4||Modeled_by Strain<br/>Modeled_by Disease_relevant_gene||Strain||2||objectID: strainID<br/> objectID: GeneID <br/>primaryGeneticEntityIDs: strainID |- |5||Modeled_by Transgene||Transgene||1||objectID: TransgeneID |- |6||Modeled_by Transgene<br/> Modeled_by Disease_relevant_gene||Transgene||2||objectID: Transgene ID <br/> objectID: GeneID <br/>primaryGeneticEntityIDs: TransgeneID |- |7||Modeled_by Strain<br/>Modeled_by Variation<br/>Modeled_by Disease_relevant_gene||Strain||3||objectID: strainID objectID: GeneID <br/>primaryGeneticEntityIDs: strainID <br/> objectID: AlleleID <br/>primaryGeneticEntityIDs: strainID <br/> |} Note: *‘InferredGeneAssociation’ is not needed anymore because Alliance is not using this in the pipeline. *The old style ‘Experimental model’ annotations not be submitted to the Alliance at all. In our curation database at Caltech, the new style ‘Disease_model_annotation’ and the old style ‘Experimental model’ annotations are the same data, we just take the genes and dump them as ‘Experimental models’ for display sake in WormBase. ==Data that should be excluded from Alliance submissions (March 2020)== *Exclude entire annotation if it has data for any one of the below tags (from the ?Disease_model_annotation class) **Interacting_variation **Interacting_transgene **Interacting_gene **RNAi_experiment **Qualifier_not **Inducing_chemical **Inducing_agent **Modifier_transgene **Modifier_variation **Modifier_strain **Modifier_gene **Modifier_molecule **Other_modifier