biomedical / README.md
ajitrajasekharan's picture
Update README.md
a5d4316
|
raw
history blame
1.44 kB
metadata
language:
  - en: null
license: mit
widget:
  - text: Lou Gehrig who works for XCorp and lives in New York suffers from [MASK]
    example_title: 'Test for entity type: Disease'
  - text: Overexpression of [MASK] occurs across a wide range of cancers
    example_title: 'Test for entity type: Gene'
  - text: Patients treated with [MASK] are vulnerable to infectious diseases
    example_title: 'Test for entity type: Drug'
  - text: A eGFR level below [MASK] indicates chronic kidney disease
    example_title: 'Test for entity type: Measure '
  - text: In the [MASK], increased daily imatinib dose induced MMR
    example_title: 'Test for entity type: STUDY/TRIAL'
  - text: Paul Erdos died at [MASK]
    example_title: 'Test for entity type: TIME'
tags:
  - fill-mask: null

This model was pretrained from scratch on a custom vocabulary on Pubmed, Clinical trials corpus, and a small subset of Bookcorpus

It was used to do NER as is, with no fine-tuning as described in this post

Towards Data Science link to the same post

Github link to NER using this model in an ensemble with bert-base cased to detect 69 entity types (17 broad entity groups)